Statistical Methods Research and the Future of Personalized Medicine
Eric Laber
Eric
Laber

The vision for personalized medicine is a healthcare system that is deeply tailored to each individual patient leading to better health outcomes while reducing cost and resource consumption. Increased access to large amounts of patient data in the form of health and billing records, insurance claims, and adverse event reporting databases etc., offer an unprecedented opportunity to use data to inform personalized medicine. Thus, statisticians have a key role to play in the transition into the new era of personalized medicine.

In the statistics literature, a central concept in the study of personalized medicine is that of a treatment regime. A treatment regime is a mathematical model of the clinical decision process wherein a clinician uses accruing patient information to adapt treatment to a patients changing health status. This model is represented as a sequence of decision rules, one per stage of clinical intervention, that map up-to-date patient information to a recommended treatment. Coupling a treatment regime with a notion of optimality, i.e., maximal expected symptom reduction, admits a formal definition of a `best regime' and subsequently allows the statistical crank to be turned to grind data into an estimated optimal treatment regime. Furthermore, this framework makes it possible to study a large number of variants of the treatment regime estimation problem, e.g., missing or censored observations, measurement error, longitudinal data, shifting covariate distributions, high-dimension, and so on. Statisticians have been working feverishly over the past 15 years to lay the theoretical and methodological foundations of data-driven treatment regimes including the foregoing variations. This work has produced a number of fundamental insights in the nature of data-driven decision making and generated new knowledge in causal inference, machine learning, optimization, and semi-parametric theory. However, it is time for statisticians to think carefully about the direction of methodological research in personalized medicine.

Black Box

In the quest for (mathematically) optimal data-driven treatment regimes, there has been a push toward more flexible estimators. At the extreme, these estimators become a complex series of computationally intensive steps producing a blackbox treatment regime that is hardly intelligible even to estimator's architect. In many settings, as the estimated regime becomes more complex it becomes less likely it is to impact actual clinical practice. One reason for this is that no prudent clinician is going to take a black-box statistical model fit using a single data set and use it to assign treatments to patients. It is foolish to think that a statistical model fit to data from a single randomized or observational study should supplant both clinical expertise and all past scientific evidence that would otherwise bear on a treatment decision. Yet, in the statistical community, we often motivate the development and evaluation of methodology for treatment regimes as if clinical scientists will blindly abide by the resulting estimated regime. Instead, an estimated regime is more likely to (and should) be used to inform additional research and to become one of many pieces of information contributing to an eventual scientific consensus on how treatment should be tailored to individual patients.

Moving forward, it is imperative that statistical research on treatment regimes recognize the role that data-driven regimes are likely to play in scientific development. If our goal is to impact clinical practice, we must consider: (i) the interpretability of a regime; (ii) the ability to quantify trade-offs across multiple outcomes, i.e,. side-effects, measures of efficacy, cost, burden, etc.; (iii) using data to generate new clinical hypotheses; and (iv) visualization and other means of communicating information to patients and clinicians. P01 investigators working on treatment regimes are beginning to make headway on some of these research directions but there is much work to be done. We encourage and welcome both clinical and statistical scientists to help us push this research forward.


Comments/Discussion
I like this article. It's easy to read, and it gives a brief background and aim of personalized/precision medicine. I had some more thoughts on the problem posed by the third paragraph. As said by the author, " In many settings, as the estimated regime becomes more complex it becomes less likely it is to impact actual clinical practice. One reason for this is that no prudent clinician is going to take a black-box statistical model fit using a single data set and use it to assign treatments to patients." I agree that right now, an effort towards making sense of the research outcome is important. Maybe not a black-box, but a clear-box of which the inside complexity can be explained to a certain extent. The future of decision making by a doctor/clinician could be assisted by multiple pieces of software. I think as long as the software (black/clear-box) is proved to be reliable, clinicians in the future will start to use it. In some sense, a medicine is also a black/clear-box. Most of the time, we don't know how it works exactly, but clinical trials give some evidence that the medicine mostly likely works. There is limitation on the amount of information a single person's brain can process and calculate in a short amount of time. When a clinician decides a treatment to be assigned to a patient, the clinician cannot possibly process every bit of information of a patient: past medical history, life style, genetic traits, family disease history, etc. For a single patient, there could be a vast amount of data.

Scientists have been thinking about how to utilize the big amount of data made available by the current technologies and sciences. I think not only innovation on clinical trials, but also innovation on how diagnosis and treatment assignment is performed, will be desired. A science fiction scene: in the near future, patients will get themselves treatments at home using a mobile app on their smart phones.

A. Shan

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