Acharya CR, McCarthy JM, Owzar K, Allen AS. "Exploiting expression patterns across multiple tissues to map expression quantitative trait loci." BMC Bioinformatics.;17:257. PubMed |
Acharya CR, Owzar K, Allen AS. "Mapping eQTL by leveraging multiple tissues and DNA methylation." BMC Bioinformatics.;18(1):455. PubMed |
Baldwin M, Owzar K, Zembutsu H, Chhibber A, Kubo M, Jiang C, Watson D, Eclov RJ, Mefford J, McLeod HL, Friedman PN, Hudis CA, Winer EP, Jorgenson EM, Witte JS, Shulman LN, Nakamura Y, Ratain MJ, Kroetz DL. "A genome-wide association study identifies novel loci for paclitaxel-induced sensory peripheral neuropathy in CALGB 40101." Clin Cancer Res.;18(18):5099-109. PubMed |
Bellach A, Kosorok MR, Rüschendorf L, Fine JP. "Weighted NPMLE for the subdistribution of a competing risk." J Am Stat Assoc.;114(525):259-270. PubMed |
Butler EL, Laber EB, Davis SM, Kosorok MR. "Incorporating patient preferences into estimation of optimal individualized treatment rules." Biometrics.;74(1):18-26. PubMed |
Chang SM, Tzeng JY, Chen RB. "Fast Bayesian variable screenings for binary response regressions with small sample size." J Stat Comput Simul.;87(14):2708-2723. PubMed |
Chang J, Tang CYong, Wu Y. "Local independence feature screening for nonparametric and semiparametric models by marginal empirical likelihood." Ann Stat.;44(2):515-539. PubMed |
Chen M, Lin H, Zhao H. "Change point analysis of histone modifications reveals epigenetic blocks linking to physical domains." Ann Appl Stat.;10(1):506-526. PubMed |
Chen J, Fu H, He X, Kosorok MR, Liu Y. "Estimating individualized treatment rules for ordinal treatments." Biometrics.;74(3):924-933. PubMed |
Chen T, Zeng D, Wang Y. "Multiple kernel learning with random effects for predicting longitudinal outcomes and data integration." Biometrics.;71(4):918-28. PubMed |
Chen H, Zeng D, Wang Y. "Penalized nonlinear mixed effects model to identify biomarkers that predict disease progression." Biometrics.;73(4):1343-1354. PubMed |
Cui Y, Zhu R, Kosorok M. "Tree based weighted learning for estimating individualized treatment rules with censored data." Electron J Stat.;11(2):3927-3953. PubMed |
Gao F, Zeng D, Lin DY. "Semiparametric estimation of the accelerated failure time model with partly interval-censored data." Biometrics.;73(4):1161-1168. PubMed |
Helgeson ES, Liu Q, Chen G, Kosorok MR, Bair E. "Biclustering via sparse clustering." Biometrics.;76(1):348-358. PubMed |
Jusakul A, Cutcutache I, Yong CHan, Lim JQuan, Huang MNi, Padmanabhan N, Nellore V, Kongpetch S, Ng AWei Tian, Ng LMoy, Choo SPin, Myint SSwe, Thanan R, Nagarajan S, Lim WKhong, Ng CChuan Youn, Boot A, Liu M, Ong CKiat, Rajasegaran V, Lie S, Lim ASoon Tiong, Lim THui, Tan J, Loh JLiang, McPherson JR, Khuntikeo N, Bhudhisawasdi V, Yongvanit P, Wongkham S, Totoki Y, Nakamura H, Arai Y, Yamasaki S, Chow PKahHoe, Chung AYaw Fui, Ooi LLucien Pen, Lim KHon, Dima S, Duda DG, Popescu I, Broet P, Hsieh SY, Yu MC, Scarpa A, Lai J, Luo DX, Carvalho ALopes, Vettore ALuiz, Rhee H, Park YNyun, Alexandrov LB, Gordân R, Rozen SG, Shibata T, Pairojkul C, Teh BTean, Tan P. "Whole-genome and epigenomic landscapes of etiologically distinct subtypes of cholangiocarcinoma." Cancer Discov.;7(10):1116-1135. PubMed |
Kimes PK, Liu Y, Hayes DNeil, Marron JStephen. "Statistical significance of hierarchical clustering." Biometrics.;73(3):811-821. PubMed |
Kong D, Maity A, Hsu FC, Tzeng JY. "Rejoinder to "A note on testing and estimation in marker-set association study using semiparametric quantile regression kernel machine"." Biometrics.;74(2):767-768. PubMed |
Kosorok MR, Laber EB. "Precision medicine." Annu Rev Stat Appl.;6:263-286. PubMed |
Li Z, Lin J, Sibley AB, Truong T, Chua KC, Jiang Y, McCarthy J, Kroetz DL, Allen A, Owzar K. "Efficient estimation of grouped survival models." BMC Bioinformatics.;20(1):269. PubMed |
Li Z, Owzar K. "Fitting Cox models with doubly censored data using spline-based sieve marginal likelihood." Scand Stat Theory Appl.;43(2):476-486. PubMed |
Lin J, Sibley A, Shterev I, Nixon A, Innocenti F, Chan C, Owzar K. "fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies." BMC Bioinformatics.;20(1):333. PubMed |
Lin DY, Tao R, Kalsbeek WD, Zeng D, Gonzalez F, Fernández-Rhodes L, Graff M, Koch GG, North KE, Heiss G. "Genetic association analysis under complex survey sampling: the Hispanic Community Health Study/Study of Latinos." Am J Hum Genet.;95(6):675-88. PubMed |
Little P, Lin DY, Sun W. "Associating somatic mutations to clinical outcomes: a pan-cancer study of survival time." Genome Med.;11(1):37. PubMed |
Liu J, Sun W, Liu Y. "Joint skeleton estimation of multiple directed acyclic graphs for heterogeneous population." Biometrics.;75(1):36-47. PubMed |
Liu Z, Song R, Zeng D, Zhang J. "Principal components adjusted variable screening." Comput Stat Data Anal.;110:134-144. PubMed |
Liu Y, Wang Y, Zeng D. "Sequential multiple assignment randomization trials with enrichment design." Biometrics.;73(2):378-390. PubMed |
Liu Y, Wu Y, He Q. "Utility-based weighted multicategory robust support vector machines." Stat Interface.;3(4):465-476. PubMed |
Luo Y, Maity A, Wu MC, Smith C, Duan Q, Li Y, Tzeng JY. "On the substructure controls in rare variant analysis: Principal components or variance components?" Genet Epidemiol.;42(3):276-287. PubMed |
Maity A, Zhao J, Sullivan PF, Tzeng JY. "Inference on phenotype-specific effects of genes using multivariate kernel machine regression." Genet Epidemiol.;42(1):64-79. PubMed |
Mao L, Lin DY. "Efficient estimation of semiparametric transformation models for the cumulative incidence of competing risks." J R Stat Soc Series B Stat Methodol.;79(2):573-587. PubMed |
Mao L, Lin DY, Zeng D. "Semiparametric regression analysis of interval-censored competing risks data." Biometrics.;73(3):857-865. PubMed |
Pang H, Kim I, Zhao H. "Random effects model for multiple pathway analysis with applications to type II diabetes microarray data." Stat Biosci.;7(2):167-186. PubMed |
Phanstiel DH, Van Bortle K, Spacek D, Hess GT, Shamim MSaad, Machol I, Love MI, Aiden ELieberman, Bassik MC, Snyder MP. "Static and dynamic DNA loops form AP-1-bound activation hubs during macrophage development." Mol Cell.;67(6):1037-1048.e6. PubMed |
Silva GO, Siegel MB, Mose LE, Parker JS, Sun W, Perou CM, Chen M. "SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling." Genome Biol.;18(1):66. PubMed |
Song R, Luo S, Zeng D, Zhang HHelen, Lu W, Li Z. "Semiparametric single-index model for estimating optimal individualized treatment strategy. " Electron J Stat.;11(1):364-384. PubMed |
Tang ZZ, Bunn P, Tao R, Liu Z, Lin DY. "PreMeta: A tool to facilitate meta-analysis of rare-variant associations." BMC Genomics.;18(1):160. PubMed |
Tao R, Zeng D, Lin DY. "Efficient semiparametric inference under two-phase sampling, with applications to genetic association studies." J Am Stat Assoc.;112(520):1468-1476. PubMed |
Xie J, Li R. "False discovery rate control for high dimensional networks of quantile associations conditioning on covariates." J R Stat Soc Series B Stat Methodol.;80(5):1015-1034. PubMed |
Xue H, Wu S, Wu Y, Idarraga JCRamirez, Wu H. "Independence screening for high dimensional nonlinear additive ODE models with applications to dynamic gene regulatory networks." Stat Med.;37(17):2630-2644. PubMed |
Yazdani A, Yazdani A, Elsea SH, Schaid DJ, Kosorok MR, Dangol G, Samiei A. "Genome analysis and pleiotropy assessment using causal networks with loss of function mutation and metabolomics." BMC Genomics.;20(1):395. PubMed |
Zeng D, Gao F, Lin DY. "Maximum likelihood estimation for semiparametric regression models with multivariate interval-censored data." Biometrika.;104(3):505-525. PubMed |
Zhang X, Wu Y, Wang L, Li R. "A consistent information criterion for support vector machines in diverging model spaces." J Mach Learn Res.;17(16):1-26. PubMed |
Zhang C, Liu Y, Wu Y. "On quantile regression in reproducing kernel Hilbert spaces with data sparsity constraint." J Mach Learn Res.;17(40):1-45. PubMed |
Zhang C, Liu Y, Wang J, Zhu H. "Reinforced angle-based multicategory support vector machines." J Comput Graph Stat.;25(3):806-825. PubMed |
Zhang X, Wu Y, Wang L, Li R. "Variable selection for support vector machines in moderately high dimensions." J R Stat Soc Series B Stat Methodol.;78(1):53-76. PubMed |
Zhao J, Li D, Seo J, Allen AS, Gordân R. "Quantifying the impact of non-coding variants on transcription factor-DNA binding." Res Comput Mol Biol.;10229:336-352. PubMed |
Zhou X, Mayer-Hamblett N, Khan U, Kosorok MR. "Residual weighted learning for estimating individualized treatment rules." J Am Stat Assoc.;112(517):169-187. PubMed |