Project 2.2: Publications


Aims       Publications       Software       Investigators

Abanto-Valle CA, Langrock R, Chen MH, Cardoso MV. "Maximum likelihood estimation for stochastic volatility in mean models with heavy-tailed distributions." Appl Stoch Models Bus Ind.;33(4):394-408. PubMed
Baldoni PL, Rashid NU, Ibrahim JG. "Improved detection of epigenomic marks with mixed effects hidden Markov models." Biometrics.;75(4):1401-1413. PubMed
Barry WT, Perou CM, Marcom K, Carey LA, Ibrahim JG. "The use of Bayesian hierarchical models for adaptive randomization in biomarker-driven phase II studies." J Biopharm Stat.;25(1):66-88. PubMed
Cao H, Churpek MM, Zeng D, Fine JP. "Analysis of the proportional hazards model with sparse longitudinal covariates." J Am Stat Assoc.;110(511):1187-1196. PubMed
Cao H, Zeng D, Fine JP. "Regression analysis of sparse asynchronous longitudinal data." J R Stat Soc Series B Stat Methodol.;77(4):755-776. PubMed
Chen Y, Liu Y, Ning J, Cormier J, Chu H. "A hybrid model for combining case-control and cohort studies in systematic reviews of diagnostic tests." J R Stat Soc Ser C Appl Stat.;64(3):469-489. PubMed
Chen Y, Liu Y, Chu H, Lee MLTing, Schmid CH. "A simple and robust method for multivariate meta-analysis of diagnostic test accuracy." Stat Med.;36(1):105-121. PubMed
Chen K, Mishra N, Smyth J, Bar H, Schifano E, Kuo L, Chen MH. "A tailored multivariate mixture model for detecting proteins of concordant change among virulent strains of Clostridium Perfringens." J Am Stat Assoc.;113(522):546-559. PubMed
Chow SM, Lu Z, Sherwood A, Zhu H. "Fitting nonlinear ordinary differential equation models with random effects and unknown initial conditions using the stochastic approximation expectation-maximization (SAEM) algorithm." Psychometrika.;81(1):102-34. PubMed
Cornea E, Zhu H, Kim P, Ibrahim JG. "Regression models on Riemannian symmetric spaces." J R Stat Soc Series B Stat Methodol.;79(2):463-482. PubMed
DE Castro M, Chen MH, Zhang Y. "Bayesian frailty models for multi-state survival data..
DE Castro M, Chen MH, Zhang Y. "Bayesian path specific frailty models for multi-state survival data with applications." Biometrics.;71(3):760-71. PubMed
Deng Q, Zhang YY, Roy D, Chen MH. "Superiority of combining two independent trials in interim futility analysis." Stat Methods Med Res.;29(2):522-540. PubMed
Diao G, Liu GF, Zeng D, Wang W, Tan X, Heyse JF, Ibrahim JG. "Efficient methods for signal detection from correlated adverse events in clinical trials." Biometrics.;75(3):1000-1008. PubMed
Diao G, Zeng D, Ibrahim JG, Rong A, Lee O, Zhang K, Chen Q. "Statistical design of noninferiority multiple region clinical trials to assess global and consistent treatment effects." J Biopharm Stat.;27(6):933-944. PubMed
Eggleston BS, Ibrahim JG, Catellier D. "Bayesian clinical trial design using Markov models with applications to autoimmune disease." Contemp Clin Trials.;63:73-83. PubMed
Gao F, Zeng D, Wei H, Wang X, Ibrahim JG. "Estimating Treatment Effects for recurrent events in the presence of rescue medications: An application to the Immune Thrombocytopenia Study." Stat Biosci.;10(2):473-489. PubMed
Gould L, Boye MErnest, Crowther MJ, Ibrahim JG, Quartey G, Micallef S, Bois FY. "Joint modeling of survival and longitudinal non-survival data: current methods and issues. Report of the DIA Bayesian joint modeling working group." Stat Med.;34(14):2181-95. PubMed
Gould L, Boye MErnest, Crowther MJ, Ibrahim JG, Quartey G, Micallef S, Bois FY. "Responses to discussants of 'Joint modeling of survival and longitudinal non-survival data: current methods and issues. report of the DIA Bayesian joint modeling working group'." Stat Med.;34(14):2202-3. PubMed
Guo R, Ahn M, Zhu H. "Spatially weighted principal component analysis for imaging classification." J Comput Graph Stat.;24(1):274-296. PubMed
Gwon Y, Mo M, Chen MH, Chi Z, Li J, Xia AH, Ibrahim JG. "Network meta-regression for ordinal outcomes: Applications in comparing Crohn's disease treatments." Stat Med.. PubMed
Hodgson E, Olshan AF, North KE, Poole CL, Zeng D, Tse CK, Keku TO, Galanko J, Sandler R, Millikan RC. "The case-only independence assumption: associations between genetic polymorphisms and smoking among controls in two population-based studies." Int J Mol Epidemiol Genet.;3(4):333-60. PubMed
Ibrahim JG, Chu H, Chen LM. "Basic concepts and methods for joint models of longitudinal and survival data." J Clin Oncol.;28(16):2796-801. PubMed
Ibrahim JG, Chen MH, Xia A, Liu T, Henessey V. "Bayesian meta-experimental design for evaluating cardiovascular risk.:13-38.
Ibrahim JG, Kim S, Chen MH, Shah AK, Lin J. "Bayesian multivariate skew meta-regression models for individual patient data." Stat Methods Med Res.;28(10-11):3415-3436. PubMed
Ibrahim JG, Chen MH, Lakshminarayanan M, Liu GF, Heyse JF. "Bayesian probability of success for clinical trials using historical data." Stat Med.;34(2):249-64. PubMed
Ibrahim JG, Chen MH, Gwon Y, Chen F. "The power prior: Theory and applications." Stat Med.;34(28):3724-49. PubMed
Joeng HK, Chen MH, Kang S. "Proportional exponentiated link transformed hazards (ELTH) models for discrete time survival data with application." Lifetime Data Anal.;22(1):38-62. PubMed
Kong D, Ibrahim JG, Lee E, Zhu H. "FLCRM: Functional linear Cox regression model." Biometrics.;74(1):109-117. PubMed
Lachos VH, Chen MH, Abanto-Valle CA, Azevedo CLN. "Quantile regression for censored mixed-effects models with applications to HIV studies." Stat Interface.;8(2):203-215. PubMed
Leão WL, Abanto-Valle CA, Chen MH. "Bayesian analysis of stochastic volatility-in-mean model with leverage and asymmetrically heavy-tailed error using generalized hyperbolic skew Student's t-distribution." Stat Interface.;10:529-541. PubMed
Lee E, Zhu H, Kong D, Wang Y, Giovanello KSullivan, Ibrahim JG. "BFLCRM: A Bayesian functional linear Cox regression model for predicting time to conversion to Alzheimer's disease." Ann Appl Stat.;9(4):2153-2178. PubMed
Lewis PO, Chen MH, Kuo L, Lewis LA, Fučíková K, Neupane S, Wang YB, Shi D. "Estimating Bayesian phylogenetic information content. " Syst Biol.;65(6):1009-1023. PubMed
Li W, Chen MH, Wangy X, Dey DK. "Bayesian design of non-inferiority clinical trials via the Bayes factor." Stat Biosci.;10(2):439-459. PubMed
Li H, Chen MH, Ibrahim JG, Kim S, Shah AK, Lin J, Tershakovec AM. "Bayesian inference for network meta-regression using multivariate random effects with applications to cholesterol lowering drugs." Biostatistics.;20(3):499-516. PubMed
Liu Y, Hu G, Cao L, Wang X, Chen MH. "A comparison of Monte Carlo methods for computing marginal likelihoods of item response theory models." J Korean Stat Soc.;48(4):503-512. PubMed
Lu ZH, Khondker Z, Ibrahim JG, Wang Y, Zhu H. "Bayesian longitudinal low-rank regression models for imaging genetic data from longitudinal studies." Neuroimage.;149:305-322. PubMed
Ma X, Suri MFareed K, Chu H. "A trivariate meta-analysis of diagnostic studies accounting for prevalence and non-evaluable subjects: re-evaluation of the meta-analysis of coronary CT angiography studies." BMC Med Res Methodol.;14:128. PubMed
Neupane S, Fučíková K, Lewis LA, Kuo L, Chen MH, Lewis PO. "Assessing combinability of phylogenomic data using Bayes factors." Syst Biol.;68(5):744-754. PubMed
Oguz I, Farzinfar M, Matsui J, Budin F, Liu Z, Gerig G, Johnson HJ, Styner M. "DTIPrep: quality control of diffusion-weighted images." Front Neuroinform.;8:4. PubMed
Psioda MA, Ibrahim JG. "Bayesian clinical trial design using historical data that inform the treatment effect." Biostatistics.;20(3):400-415. PubMed
Rao S, Ibrahim JG, Cheng J, Yap PT, Zhu H. "SR-HARDI: Spatially regularizing high angular resolution diffusion imaging." J Comput Graph Stat.;25(4):1195-1211. PubMed
Schifano ED, Wu J, Wang C, Yan J, Chen MH. "Online updating of statistical inference in the big data setting." Technometrics.;58(3):393-403. PubMed
Sun Q, Zhu H, Liu Y, Ibrahim JG. "SPReM: Sparse projection regression model for high-dimensional linear regression." J Am Stat Assoc.;110(509):289-302. PubMed
Tan HJ, Meyer AM, Kuo TM, Smith AB, Wheeler SB, Carpenter WR, Nielsen ME. "Provider-based research networks and diffusion of surgical technologies among patients with early-stage kidney cancer." Cancer.;121(6):836-43. PubMed
Tang N, Zhao P, Zhu H. "Empirical likelihood for estimating equations with nonignorably missing data." Stat Sin.;24(2):723-747. PubMed
Verde AR, Budin F, Berger JB, Gupta A, Farzinfar M, Kaiser A, Ahn M, Johnson H, Matsui J, Hazlett HC, Sharma A, Goodlett C, Shi Y, Gouttard S, Vachet C, Piven J, Zhu H, Gerig G, Styner M. "UNC-Utah NA-MIC framework for DTI fiber tract analysis." Front Neuroinform.;7:51. PubMed
Wang YB, Chen MH, Kuo L, Lewis PO. "A new Monte Carlo method for estimating marginal likelihoods." Bayesian Anal.;13(2):311-333. PubMed
Wang J, Shen H, Zhu H. "Discussion of the paper "Clustering random curves under spatial interdependence with application to service accessibility" by Jiang and Serban." Technometrics.;54(2):129-133. PubMed
Wang X, Chen MH, Kuo RC, Dey DK. "Dynamic spatial pattern recognition in count data.:185-202.
Wang Y, Liang B, Tong X, Marder K, Bressman S, Orr-Urtreger A, Giladi N, Zeng D. "Efficient estimation of nonparametric genetic risk function with censored data." Biometrika.;102(3):515-532. PubMed
Wang C, Chen MH, Wu J, Yan J, Zhang Y, Schifano E. "Online updating method with new variables for big data streams." Can J Stat.;46(1):123-146. PubMed
Wang W, Chen MH, Chiou SHan, Lai HC, Wang X, Yan J, Zhang Z. "Onset of persistent pseudomonas aeruginosa infection in children with cystic fibrosis with interval censored data." BMC Med Res Methodol.;16(1):122. PubMed
Wang YB, Chen MH, Kuo L, Lewis PO. "Partition weighted approach for estimating the marginal posterior density with applications." J Comput Graph Stat.;28(2):334-349. PubMed
Wang C, Chen MH, Schifano E, Wu J, Yan J. "Statistical methods and computing for big data." Stat Interface.;9(4):399-414. PubMed
Wilson FR, Varu A, Mitra D, Cameron C, Iyer S. "Systematic review and network meta-analysis comparing palbociclib with chemotherapy agents for the treatment of postmenopausal women with HR-positive and HER2-negative advanced/metastatic breast cancer." Breast Cancer Res Treat.;166(1):167-177. PubMed
Wu J, Chen MH, Schifano ED, Ibrahim JG, Fisher JD. "A new Bayesian joint model for longitudinal count data with many zeros, intermittent missingness, and dropout with applications to HIV prevention trials." Stat Med.;38(30):5565-5586. PubMed
Wu J, DE Castro M, Schifano ED, Chen MH. "Assessing covariate effects using Jeffreys-type prior in the Cox model in the presence of a monotone partial likelihood." J Stat Theory Pract.;12(1):23-41. PubMed
Wu J, Ibrahim JG, Chen MH, Schifano ED, Fisher JD. "Bayesian modeling and inference for nonignorably missing longitudinal binary response data with applications to HIV prevention trials." Stat Sin.;28:1929-1963. PubMed
Xia K, Yu Y, Ahn M, Zhu H, Zou F, Gilmore JH, Knickmeyer RC. "Environmental and genetic contributors to salivary testosterone levels in infants." Front Endocrinol (Lausanne).;5:187. PubMed
Yang HC, Hu G, Chen MH. "Bayesian variable selection for Pareto regression models with latent multivariate log Gamma process with applications to earthquake magnitudes" Geosciences (Basel).;9(4). PubMed
Yao H, Kim S, Chen MH, Ibrahim JG, Shah AK, Lin J. "Bayesian inference for multivariate meta-regression with a partially observed within-study sample covariance matrix." J Am Stat Assoc.;110(510):528-544. PubMed
Yu F, Chen MH, Kuo L, Talbott H, Davis JS. "Confident difference criterion: a new Bayesian differentially expressed gene selection algorithm with applications." BMC Bioinformatics.;16:245. PubMed
Zeng D, Cornea E, Dong J, Pan J, Ibrahim JG. "Assessing temporal agreement between central and local progression-free survival times." Stat Med.;34(5):844-58. PubMed
Zeng D, Lin DY. "Efficient estimation of semiparametric transformation models for two-phase cohort studies." J Am Stat Assoc.;109(505):371-383. PubMed
Zeng D, Gao F, Hu K, Jia C, Ibrahim JG. "Hypothesis testing for two-stage designs with over or under enrollment." Stat Med.;34(16):2417-26. PubMed
Zhang D, Chen MH, Ibrahim JG, Boye ME, Wang P, Shen W. "Assessing model fit in joint models of longitudinal and survival data with applications to cancer clinical trials." Stat Med.;33(27):4715-33. PubMed
Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W. "Bayesian model assessment in joint modeling of longitudinal and survival data with applications to cancer clinical trials." J Comput Graph Stat.;26(1):121-133. PubMed
Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W. "JMFit: A SAS macro for joint models of longitudinal and survival data." J Stat Softw.;71(3). PubMed
Zhu H, Ibrahim JG, Chen Q. "Bayesian case-deletion model complexity and information criterion." Stat Interface.;7(4):531-542. PubMed
Zhu H, Ibrahim JG, Chen MH. "Diagnostic measures for the Cox regression model with missing covariates." Biometrika.;102(4):907-923. PubMed