Publications - All

Jiang X, Nelson AE, Cleveland RJ, Beavers DP, Schwartz TA, Arbeeva L, Alvarez C, Callahan LF, Messier S, Loeser R, Kosorok MR. "A precision medicine approach to develop and internally validate optimal exercise and weight loss treatments for overweight and obese adults with knee osteoarthritis." Arthritis Care Res (Hoboken). 2021;73(5):693-701. PubMed
Luckett DJ, Laber EB, El-Kamary SS, Fan C, Jhaveri R, Perou CM, Shebl FM, Kosorok MR. "Receiver operating characteristic curves and confidence bands for support vector machines." Biometrics. 2021;77(4):1422-1430. PubMed
Wang X, Piantadosi S, Le-Rademacher J, Mandrekar SJ. "Statistical considerations for subgroup analyses." J Thorac Oncol. 2021;16(3):375-380. PubMed
Yu J, Zhou H, Cai J. "Accelerated failure time model for data from outcome-dependent sampling." Lifetime Data Anal. 2021;27(1):15-37. PubMed
Bhattacharya A, García-Closas M, Olshan AF, Perou CM, Troester MA, Love MI. "A framework for transcriptome-wide association studies in breast cancer in diverse study populations." Genome Biol. 2020;21(1):42. PubMed
Brucker A, Lu W, West RMarceau, Yu QY, Hsiao CKate, Hsiao TH, Lin CH, Magnusson PKE, Sullivan PF, Szatkiewicz JP, Lu TP, Tzeng JY. "Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis." PLoS Comput Biol. 2020;16(5):e1007797. PubMed
Cao X, Ganti AKishor, Stinchcombe T, Wong ML, Ho JC, Shen C, Liu Y, Crawford J, Pang H, Wang X. "Predicting risk of chemotherapy-induced severe neutropenia: A pooled analysis in individual patients data with advanced lung cancer." Lung Cancer. 2020;141:14-20. PubMed
Chen Q, Zhang F, Chen MH, Cong XJulie. "Estimation of treatment effects and model diagnostics with two-way time-varying treatment switching: an application to a head and neck study." Lifetime Data Anal. 2020;26(4):685-707. PubMed
Chua KC, Xiong C, Ho C, Mushiroda T, Jiang C, Mulkey F, Lai D, Schneider BP, Rashkin SR, Witte JS, Friedman PN, Ratain MJ, McLeod HL, Rugo HS, Shulman LN, Kubo M, Owzar K, Kroetz DL. "Genomewide meta-analysis validates a role for S1PR1 in microtubule targeting agent-induced sensory peripheral neuropathy." Clin Pharmacol Ther. 2020;108(3):625-634. PubMed
Cruz-Garcia L, O'Brien G, Sipos B, Mayes S, Love MI, Turner DJ, Badie C. "Generation of a transcriptional radiation exposure signature in human blood using long-read nanopore sequencing." Radiat Res. 2020;193(2):143-154. PubMed
DE Castro M, Chen MH, Zhang Y, D'Amico AV. "A Bayesian multi-risks survival (MRS) model in the presence of double censorings." Biometrics. 2020;76(4):1297-1309. PubMed
Deng Q, Zhang YY, Roy D, Chen MH. "Superiority of combining two independent trials in interim futility analysis." Stat Methods Med Res. 2020;29(2):522-540. PubMed
Dong L, Laber E, Goldberg Y, Song R, Yang S. "Ascertaining properties of weighting in the estimation of optimal treatment regimes under monotone missingness." Stat Med. 2020;39(25):3503-3520. PubMed
Guan Q, Reich BJ, Laber EB, Bandyopadhyay D. "Bayesian nonparametric policy search with application to periodontal recall intervals." J Am Stat Assoc. 2020;115(531):1066-1078. PubMed
Gwon Y, Mo M, Chen MH, Chi Z, Li J, Xia AH, Ibrahim JG. "Network meta-regression for ordinal outcomes: Applications in comparing Crohn's disease treatments." Stat Med. 2020. PubMed
Helgeson ES, Liu Q, Chen G, Kosorok MR, Bair E. "Biclustering via sparse clustering." Biometrics. 2020;76(1):348-358. PubMed
Huang J, Sachdeva M, Xu E, Robinson TJ, Luo L, Ma Y, Williams NT, Lopez O, Cervia LD, Yuan F, Qin X, Zhang D, Owzar K, Gokgoz N, Seto A, Okada T, Singer S, Andrulis IL, Wunder JS, Lazar AJ, Rubin BP, Pipho K, Mello SS, Giudice J, Kirsch DG. "The long noncoding RNA promotes sarcoma metastasis by regulating RNA splicing pathways." Mol Cancer Res. 2020;18(10):1534-1544. PubMed
Jeng J, Rhyne J, Zhang T, Tzeng JY. "Effective SNP ranking improves the performance of eQTL mapping." Genet Epidemiol. 2020;44(6):611-619. PubMed
Li X, Ivanova A, Tian H, Lim P, Liu K. "Continual reassessment method with regularization in phase I clinical trials." J Biopharm Stat. 2020;30(6):964-978. PubMed
Li J, Jung SH. "Sample size calculation for cluster randomization trials with a time-to-event endpoint." Stat Med. 2020;39(25):3608-3623. PubMed
Li F, Allen AS. "Secondary analysis of case-control association studies: Insights on weighting-based inference motivate a new specification test." Stat Med. 2020;39(22):2869-2882. PubMed
Lin DY, Zeng D, Couper D. "A general framework for integrative analysis of incomplete multiomics data." Genet Epidemiol. 2020;44(7):646-664. PubMed
Love MI, Soneson C, Hickey PF, Johnson LK, Pierce T, Shepherd L, Morgan M, Patro R. "Tximeta: Reference sequence checksums for provenance identification in RNA-seq." PLoS Comput Biol. 2020;16(2):e1007664. PubMed
Luckett DJ, Laber EB, Kahkoska AR, Maahs DM, Mayer-Davis E, Kosorok MR. " Estimating dynamic treatment regimes in mobile health using V-learning." J Am Stat Assoc. 2020;115(530):692-706. PubMed
Maitra P, Amorim LDAF, Cai J. "Multiplicative rates model for recurrent events in case-cohort studies." Lifetime Data Anal. 2020;26(1):134-157. PubMed
Martinez K, Maity A, Yolken RH, Sullivan PF, Tzeng JY. "Robust kernel association testing (RobKAT)." Genet Epidemiol. 2020;44(3):272-282. PubMed
McCabe SD, Lin DY, Love MI. "Consistency and overfitting of multi-omics methods on experimental data." Brief Bioinform. 2020;21(4):1277-1284. PubMed
Nguyen CT, Luckett DJ, Kahkoska AR, Shearrer GE, Spruijt-Metz D, Davis JN, Kosorok MR. "Estimating individualized treatment regimes from crossover designs." Biometrics. 2020;76(3):778-788. PubMed
Psioda MA, Hu K, Zhang Y, Pan J, Ibrahim JG. "Bayesian design of biosimilars clinical programs involving multiple therapeutic indications." Biometrics. 2020;76(2):630-642. PubMed
Rashid NU, Li Q, Yeh JJen, Ibrahim JG. "Modeling between-study heterogeneity for improved replicability in gene signature selection and clinical prediction." J Am Stat Assoc. 2020;115(531):1125-1138. PubMed
Rashid NU, Peng XL, Jin C, Moffitt RA, Volmar KE, Belt BA, Panni RZ, Nywening TM, Herrera SG, Moore KJ, Hennessey SG, Morrison AB, Kawalerski R, Nayyar A, Chang AE, Schmidt B, Kim HJin, Linehan DC, Yeh JJen. "Purity independent subtyping of tumors (PurIST), a clinically robust, single-sample classifier for tumor subtyping in pancreatic cancer." Clin Cancer Res. 2020;26(1):82-92. PubMed
Secord AAlvarez, Burdett KBell, Owzar K, Tritchler D, Sibley AB, Liu Y, Starr MD, Brady C, Lankes HA, Hurwitz HI, Mannel RS, Tewari KS, O'Malley DM, Gray H, Bakkum-Gamez JN, Fujiwara K, Boente M, Deng W, Burger RA, Birrer MJ, Nixon AB. "Predictive blood-based biomarkers in patients with epithelial ovarian cancer treated with carboplatin and paclitaxel with or without bevacizumab: Results from GOG-0218." Clin Cancer Res. 2020;26(6):1288-1296. PubMed
Shi C, Lu W, Song R. "A sparse random projection-based test for overall qualitative treatment effects." J Am Stat Assoc. 2020;115(531):1201-1213. PubMed
Srivastava A, Malik L, Sarkar H, Zakeri M, Almodaresi F, Soneson C, Love MI, Kingsford C, Patro R. "Alignment and mapping methodology influence transcript abundance estimation." Genome Biol. 2020;21(1):239. PubMed
Staicu AM, Islam MNazmul, Dumitru R, van Heugten E. "Longitudinal dynamic functional regression." J R Stat Soc Ser C Appl Stat. 2020;69(1):25-46. PubMed
Wang F, Schilsky RL, Page D, Califf RM, Cheung K, Wang X, Pang H. "Development and validation of a natural language processing tool to generate the CONSORT reporting checklist for randomized clinical trials." JAMA Netw Open. 2020;3(10):e2014661. PubMed
Wang YB, Chen MH, Shi W, Lewis P, Kuo L. "Inflated density ratio and its variation and generalization for computing marginal likelihoods." J Korean Stat Soc. 2020;49(1):244-263. PubMed
Wang R, Lin DY, Jiang Y. "SCOPE: A normalization and copy-number estimation method for single-cell DNA sequencing." Cell Syst. 2020;10(5):445-452.e6. PubMed
Wisdom AJ, Mowery YM, Hong CS, Himes JE, Nabet BY, Qin X, Zhang D, Chen L, Fradin H, Patel R, Bassil AM, Muise ES, King DA, Xu ES, Carpenter DJ, Kent CL, Smythe KS, Williams NT, Luo L, Ma Y, Alizadeh AA, Owzar K, Diehn M, Bradley T, Kirsch DG. "Single cell analysis reveals distinct immune landscapes in transplant and primary sarcomas that determine response or resistance to immunotherapy." Nat Commun. 2020;11(1):6410. PubMed
Wu Y, Wang X, Lin J, Jia B, Owzar K. "Predictive accuracy of markers or risk scores for interval censored survival data." Stat Med. 2020;39(18):2437-2446. PubMed
Yan KK, Wang X, Lam WWT, Vardhanabhuti V, Lee AWM, Pang HH. "Radiomics analysis using stability selection supervised component analysis for right-censored survival data." Comput Biol Med. 2020;124:103959. PubMed
Yang S, Ding P. "Combining multiple observational data sources to estimate causal effects." J Am Stat Assoc. 2020;115(531):1540-1554. PubMed
Yang S, Kim JKwang, Song R. "Doubly robust inference when combining probability and non-probability samples with high dimensional data." J R Stat Soc Series B Stat Methodol. 2020;82(2):445-465. PubMed
Yang S, Pieper K, Cools F. "Semiparametric estimation of structural failure time models in continuous-time processes." Biometrika. 2020;107(1):123-136. PubMed
Zhou F, Zhou H, Li T, Zhu H. "Analysis of secondary phenotypes in multigroup association studies." Biometrics. 2020;76(2):606-618. PubMed
Zhou Q, Cai J, Zhou H. "Semiparametric inference for a two-stage outcome-dependent sampling design with interval-censored failure time data." Lifetime Data Anal. 2020;26(1):85-108. PubMed
Baldoni PL, Rashid NU, Ibrahim JG. "Improved detection of epigenomic marks with mixed effects hidden Markov models." Biometrics. 2019;75(4):1401-1413. PubMed
Bayar MAmine, Ivanova A, Le Teuff G. "CRM2DIM: A SAS macro for implementing the dual-agent Bayesian continual reassessment method." Comput Methods Programs Biomed. 2019;176:211-223. PubMed
Bellach A, Kosorok MR, Rüschendorf L, Fine JP. "Weighted NPMLE for the subdistribution of a competing risk." J Am Stat Assoc. 2019;114(525):259-270. PubMed
Brownstein NC, Cai J. "Tests of trend between disease outcomes and ordinal covariates discretized from underlying continuous variables: simulation studies and applications to NHANES 2007-2008." BMC Med Res Methodol. 2019;19(1):2. PubMed
Chen ST, Xiao L, Staicu AM. "A smoothing-based goodness-of-fit test of covariance for functional data." Biometrics. 2019;75(2):562-571. PubMed
Dasgupta S, Goldberg Y, Kosorok MR. "Feature elimination in kernel machines in moderately high dimensions." Ann Stat. 2019;47(1):497-526. PubMed
Diao G, Liu GF, Zeng D, Wang W, Tan X, Heyse JF, Ibrahim JG. "Efficient methods for signal detection from correlated adverse events in clinical trials." Biometrics. 2019;75(3):1000-1008. PubMed
Ganti AKishor, Wang X, Stinchcombe TE, Wang Y, Bradley J, Cohen HJ, Kelly K, Paulus R, Ramalingam SS, Vokes EE, Pang H. "Clinical prognostic model for older patients with advanced non-small cell lung cancer." J Geriatr Oncol. 2019;10(4):555-559. PubMed
Gao H, Kelsey CR, Boyle J, Xie T, Catalano S, Wang X, Yin FF. "Impact of esophageal motion on dosimetry and toxicity with thoracic radiation therapy." Technol Cancer Res Treat. 2019;18:1533033819849073. PubMed
Gao F, Zeng D, Couper D, Lin DY. "Semiparametric regression analysis of multiple right- and interval-censored events." J Am Stat Assoc. 2019;114(527):1232-1240. PubMed
Griffin L, Lee D, Jaisle A, Carek P, George T, Laber E, Lok B, Modave F, Paskett E, Krieger J. "Creating an mHealth App for Colorectal Cancer Screening: User-Centered Design Approach." JMIR Hum Factors. 2019;6(2):e12700. PubMed
Hamy AS, Tury S, Wang X, Gao J, Pierga JY, Giacchetti S, Brain E, Pistilli B, Marty M, Espié M, Benchimol G, Laas E, Laé M, Asselain B, Aouchiche B, Edelman M, Reyal F. "Celecoxib with neoadjuvant chemotherapy for breast cancer might worsen outcomes differentially by COX-2 expression and ER status: Exploratory analysis of the REMAGUS02 trial." J Clin Oncol. 2019;37(8):624-635. PubMed
Hu W, Laber EB, Barker C, Stefanski LA. "Assessing tuning parameter selection variability in penalized regression." Technometrics. 2019;61(2):154-164. PubMed
Ibrahim JG, Kim S, Chen MH, Shah AK, Lin J. "Bayesian multivariate skew meta-regression models for individual patient data." Stat Methods Med Res. 2019;28(10-11):3415-3436. PubMed
Jeng J, Zhang T, Tzeng JY. "Efficient signal inclusion with genomic applications" J Am Stat Assoc. 2019;114(528):1787-1799. PubMed
Jiang B, Song R, Li J, Zeng D. "Entropy learning for dynamic treatment regimes." Stat Sin. 2019;29(4):1633-1655. PubMed
Joshi N, Fine J, Chu R, Ivanova A. "Estimating the subgroup and testing for treatment effect in a post-hoc analysis of a clinical trial with a biomarker." J Biopharm Stat. 2019;29(4):685-695. PubMed
Jung SH, Chi SAh, Ahn HJoo. "K-Sample comparisons using propensity analysis." Biom J. 2019;61(3):698-713. PubMed
Kosorok MR, Laber EB. "Precision medicine." Annu Rev Stat Appl. 2019;6:263-286. PubMed
Lachos VH, Matos LA, Castro LM, Chen MH. "Flexible longitudinal linear mixed models for multiple censored responses data." Stat Med. 2019;38(6):1074-1102. PubMed
Li H, Chen MH, Ibrahim JG, Kim S, Shah AK, Lin J, Tershakovec AM. "Bayesian inference for network meta-regression using multivariate random effects with applications to cholesterol lowering drugs." Biostatistics. 2019;20(3):499-516. PubMed
Li Z, Lin J, Sibley AB, Truong T, Chua KC, Jiang Y, McCarthy J, Kroetz DL, Allen A, Owzar K. "Efficient estimation of grouped survival models." BMC Bioinformatics. 2019;20(1):269. PubMed
Li W, Liu W, Kakoki A, Wang R, Adebali O, Jiang Y, Sancar A. "Nucleotide excision repair capacity increases during differentiation of human embryonic carcinoma cells into neurons and muscle cells." J Biol Chem. 2019;294(15):5914-5922. PubMed
Lin DY. "A simple and accurate method to determine genomewide significance for association tests in sequencing studies." Genet Epidemiol. 2019;43(4):365-372. PubMed
Lin J, Sibley A, Shterev I, Nixon A, Innocenti F, Chan C, Owzar K. "fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies." BMC Bioinformatics. 2019;20(1):333. PubMed
Little P, Lin DY, Sun W. "Associating somatic mutations to clinical outcomes: a pan-cancer study of survival time." Genome Med. 2019;11(1):37. PubMed
Liu Y, Hu G, Cao L, Wang X, Chen MH. "A comparison of Monte Carlo methods for computing marginal likelihoods of item response theory models." J Korean Stat Soc. 2019;48(4):503-512. PubMed
Liu J, Sun W, Liu Y. "Joint skeleton estimation of multiple directed acyclic graphs for heterogeneous population." Biometrics. 2019;75(1):36-47. PubMed
Liu Y, Ma X, Zhang D, Geng L, Wang X, Zheng W, Chen MH. "Look before you leap: Systematic evaluation of tree-based statistical methods in subgroup identification." J Biopharm Stat. 2019;29(6):1082-1102. PubMed
Luo S, Song R, Styner M, Gilmore JH, Zhu H. "FSEM: Functional structural equation models for twin functional data." J Am Stat Assoc. 2019;114(525):344-357. PubMed
Neupane S, Fučíková K, Lewis LA, Kuo L, Chen MH, Lewis PO. "Assessing combinability of phylogenomic data using Bayes factors." Syst Biol. 2019;68(5):744-754. PubMed
Olby NJ, Lim JH, Wagner N, Zidan N, Early PJ, Mariani CL, Muñana KR, Laber E. "Time course and prognostic value of serum GFAP, pNFH, and S100β concentrations in dogs with complete spinal cord injury because of intervertebral disc extrusion." J Vet Intern Med. 2019;33(2):726-734. PubMed
Psioda MA, Ibrahim JG. "Bayesian clinical trial design using historical data that inform the treatment effect." Biostatistics. 2019;20(3):400-415. PubMed
Ruppert AS, Yin J, Davidian M, Tsiatis AA, Byrd JC, Woyach JA, Mandrekar SJ. "Application of a sequential multiple assignment randomized trial (SMART) design in older patients with chronic lymphocytic leukemia." Ann Oncol. 2019;30(4):542-550. PubMed
Schild SE, Fan W, Stinchcombe TE, Vokes EE, Ramalingam SS, Bradley JD, Kelly K, Pang HH, Wang X. "Toxicity related to radiotherapy dose and targeting strategy: A pooled analysis of cooperative group trials of combined modality therapy for locally advanced non-small cell lung cancer." J Thorac Oncol. 2019;14(2):298-303. PubMed
Shi C, Lu W, Song R. "Determining the number of latent factors in statistical multi-relational learning. " J Mach Learn Res. 2019;20. PubMed
Shi C, Song R, Chen Z, Li R. "Linear hypothesis testing for high dimensional generalized linear models." Ann Stat. 2019;47(5):2671-2703. PubMed
Shi C, Song R, Lu W. "On testing conditional qualitative treatment effects." Ann Stat. 2019;47(4):2348-2377. PubMed
Soneson C, Love MI, Patro R, Hussain S, Malhotra D, Robinson MD. "A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs." Life Sci Alliance. 2019;2(1). PubMed
Stinchcombe TE, Jänne PA, Wang X, Bertino EM, Weiss J, Bazhenova L, Gu L, Lau C, Paweletz C, Jaslowski A, Gerstner GJ, Baggstrom MQ, Graziano S, Bearden J, Vokes EE. "Effect of Erlotinib plus Bevacizumab vs Erlotinib alone on progression-free survival in patients with advanced EGFR-mutant non–small cell lung cancer: A phase 2 randomized clinical trial. " JAMA Oncol. 2019;5(10):1448-1455. PubMed
Su L, Lu W, Song R. "Modelling and estimation for optimal treatment decision with interference." Stat (Int Stat Inst). 2019;8(1). PubMed
Tsiatis AA, Davidian M, Holloway ST, Laber EB. "Dynamic Treatment Regimes: Statistical Methods for Precision Medicine 2019:602.
Wang YB, Chen MH, Kuo L, Lewis PO. "Partition weighted approach for estimating the marginal posterior density with applications." J Comput Graph Stat. 2019;28(2):334-349. PubMed
West RMarceau, Lu W, Rotroff DM, Kuenemann MA, Chang SM, Wu MC, Wagner MJ, Buse JB, Motsinger-Reif AA, Fourches D, Tzeng JY. "Identifying individual risk rare variants using protein structure guided local tests (POINT)." PLoS Comput Biol. 2019;15(2):e1006722. PubMed
Williams LA, Hoadley KA, Nichols HB, Geradts J, Perou CM, Love MI, Olshan AF, Troester MA. "Differences in race, molecular and tumor characteristics among women diagnosed with invasive ductal and lobular breast carcinomas." Cancer Causes Control. 2019;30(1):31-39. PubMed
Wojcik GL, Graff M, Nishimura KK, Tao R, Haessler J, Gignoux CR, Highland HM, Patel YM, Sorokin EP, Avery CL, Belbin GM, Bien SA, Cheng I, Cullina S, Hodonsky CJ, Hu Y, Huckins LM, Jeff J, Justice AE, Kocarnik JM, Lim U, Lin BM, Lu Y, Nelson SC, Park SSL, Poisner H, Preuss MH, Richard MA, Schurmann C, Setiawan VW, Sockell A, Vahi K, Verbanck M, Vishnu A, Walker RW, Young KL, Zubair N, Acuña-Alonso V, Ambite JLuis, Barnes KC, Boerwinkle E, Bottinger EP, Bustamante CD, Caberto C, Canizales-Quinteros S, Conomos MP, Deelman E, Do R, Doheny K, Fernández-Rhodes L, Fornage M, Hailu B, Heiss G, Henn BM, Hindorff LA, Jackson RD, Laurie CA, Laurie CC, Li Y, Lin DY, Moreno-Estrada A, Nadkarni G, Norman PJ, Pooler LC, Reiner AP, Romm J, Sabatti C, Sandoval K, Sheng X, Stahl EA, Stram DO, Thornton TA, Wassel CL, Wilkens LR, Winkler CA, Yoneyama S, Buyske S, Haiman CA, Kooperberg C, Le Marchand L, Loos RJF, Matise TC, North KE, Peters U, Kenny EE, Carlson CS. "Genetic analyses of diverse populations improves discovery for complex traits." Nature. 2019;570(7762):514-518. PubMed
Wong KYau, Fan C, Tanioka M, Parker JS, Nobel AB, Zeng D, Lin DY, Perou CM. "I-Boost: An integrative boosting approach for predicting survival time with multiple genomics platforms." Genome Biol. 2019;20(1):52. PubMed
Wong KYau, Zeng D, Lin DY. "Robust score tests with missing data in genomics studies" J Am Stat Assoc. 2019;114(528):1778-1786. PubMed
Wu J, Chen MH, Schifano ED, Ibrahim JG, Fisher JD. "A new Bayesian joint model for longitudinal count data with many zeros, intermittent missingness, and dropout with applications to HIV prevention trials." Stat Med. 2019;38(30):5565-5586. PubMed
Wu Y, Chambers CD, Xu R. "Semiparametric sieve maximum likelihood estimation under cure model with partly interval censored and left truncated data for application to spontaneous abortion." Lifetime Data Anal. 2019;25(3):507-528. PubMed
Xiao W, Zhang HH, Lu W. "Robust regression for optimal individualized treatment rules." Stat Med. 2019;38(11):2059-2073. PubMed
Xue X, Foster MC, Ivanova A. "Rapid enrollment design for finding the optimal dose in immunotherapy trials with ordered groups." J Biopharm Stat. 2019;29(4):625-634. PubMed
Yang HC, Hu G, Chen MH. "Bayesian variable selection for Pareto regression models with latent multivariate log Gamma process with applications to earthquake magnitudes" Geosciences (Basel). 2019;9(4). PubMed
Yang Y, Huh R, Culpepper HW, Lin Y, Love MI, Li Y. "SAFE-clustering: Single-cell Aggregated (From Ensemble) clustering for single-cell RNA-seq data." Bioinformatics. 2019;35(8):1269-1277. PubMed
Yang Y, Hu J, Selby CP, Li W, Yimit A, Jiang Y, Sancar A. "Single-nucleotide resolution analysis of nucleotide excision repair of ribosomal DNA in humans and mice." J Biol Chem. 2019;294(1):210-217. PubMed
Yazdani A, Yazdani A, Elsea SH, Schaid DJ, Kosorok MR, Dangol G, Samiei A. "Genome analysis and pleiotropy assessment using causal networks with loss of function mutation and metabolomics." BMC Genomics. 2019;20(1):395. PubMed
Yimit A, Adebali O, Sancar A, Jiang Y. "Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs." Nat Commun. 2019;10(1):309. PubMed
Zhang J, Liang W, Liang H, Wang X, He J. "Endpoint surrogacy in oncological randomized controlled trials with immunotherapies: a systematic review of trial-level and arm-level meta-analyses." Ann Transl Med. 2019;7(11):244. PubMed
Zhao YQ, Laber EB, Ning Y, Saha S, Sands BE. "Efficient augmentation and relaxation learning for individualized treatment rules using observational data." J Mach Learn Res. 2019;20. PubMed
Zhou J, Zhang J, Mclain AC, Lu W, Sui X, Hardin JW. "A varying-coefficient generalized odds rate model with time-varying exposure: An application to fitness and cardiovascular disease mortality." Biometrics. 2019;75(3):853-863. PubMed
Zhu A, Ibrahim JG, Love MI. "Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences." Bioinformatics. 2019;35(12):2084-2092. PubMed
Zhu W, Zeng D, Song R. "Proper inference for value function in high-dimensional Q-learning for dynamic treatment regimes." J Am Stat Assoc. 2019;114(527):1404-1417. PubMed
Burbank AJ, Todoric K, Steele P, Rosen J, Zhou H, Frye M, Loughlin CE, Ivins S, Mills K, Massey LDembnicki, Reeve BB, Hernandez ML. "Age and African-American race impact the validity and reliability of the asthma control test in persistent asthmatics." Respir Res. 2018;19(1):152. PubMed
Butler EL, Laber EB, Davis SM, Kosorok MR. "Incorporating patient preferences into estimation of optimal individualized treatment rules." Biometrics. 2018;74(1):18-26. PubMed
Chen K, Mishra N, Smyth J, Bar H, Schifano E, Kuo L, Chen MH. "A tailored multivariate mixture model for detecting proteins of concordant change among virulent strains of Clostridium Perfringens." J Am Stat Assoc. 2018;113(522):546-559. PubMed
Chen J, Zhang C, Kosorok MR, Liu Y. "Double sparsity kernel learning with automatic variable selection and data extraction." Stat Interface. 2018;11(3):401-420. PubMed
Chen J, Fu H, He X, Kosorok MR, Liu Y. "Estimating individualized treatment rules for ordinal treatments." Biometrics. 2018;74(3):924-933. PubMed
Chen X, Cai J. "Reweighted estimators for additive hazard model with censoring indicators missing at random." Lifetime Data Anal. 2018;24(2):224-249. PubMed
Choi J, Zeng D, Olshan AF, Cai J. "Joint modeling of survival time and longitudinal outcomes with flexible random effects." Lifetime Data Anal. 2018;24(1):126-152. PubMed
Chung Y, Ivanova A, Hudgens MG, Fine JP. "Partial likelihood estimation of isotonic proportional hazards models." Biometrika. 2018;105(1):133-148. PubMed
Davenport CA, Maity A, Sullivan PF, Tzeng JY. "A powerful test for SNP effects on multivariate binary outcomes using kernel machine regression." Stat Biosci. 2018;10(1):117-138. PubMed
Diao G, Dong J, Zeng D, Ke C, Rong A, Ibrahim JG. "Biomarker threshold adaptive designs for survival endpoints." J Biopharm Stat. 2018;28(6):1038-1054. PubMed
Fu S, Zhang S, Liu Y. "Adaptively weighted large margin angle-based classifiers." J Multivar Anal. 2018;166:282-299. PubMed
Gao F, Zeng D, Wei H, Wang X, Ibrahim JG. "Estimating Treatment Effects for recurrent events in the presence of rescue medications: An application to the Immune Thrombocytopenia Study." Stat Biosci. 2018;10(2):473-489. PubMed
Gao F, Zeng D, Lin DY. "Semiparametric regression analysis of interval-censored data with informative dropout." Biometrics. 2018;74(4):1213-1222. PubMed
Gong S, Zhang K, Liu Y. "Efficient test-based variable selection for high-dimensional linear models." J Multivar Anal. 2018;166:17-31. PubMed
Hager R, Tsiatis AA, Davidian M. "Optimal two-stage dynamic treatment regimes from a classification perspective with censored survival data." Biometrics. 2018;74(4):1180-1192. PubMed
Hao B, Sun WWei, Liu Y, Cheng G. "Simultaneous clustering and estimation of heterogeneous graphical models." J Mach Learn Res. 2018;18. PubMed
Hibbard JC, Friedstat JS, Thomas SM, Edkins RE, Hultman S, Kosorok MR. "LIBERTI: A SMART study in plastic surgery." Clin Trials. 2018;15(3):286-293. PubMed
Hidalgo SJTeran, Wu MC, Engel SM, Kosorok MR. "Goodness-of-fit test for nonparametric regression models: Smoothing spline ANOVA models as example." Comput Stat Data Anal. 2018;122:135-155. PubMed
Innocenti F, Jiang C, Sibley AB, Etheridge AS, Hatch AJ, Denning S, Niedzwiecki D, Shterev ID, Lin J, Furukawa Y, Kubo M, Kindler HL, Auman T, Venook AP, Hurwitz HI, McLeod HL, Ratain MJ, Gordân R, Nixon AB, Owzar K. "Genetic variation determines VEGF-A plasma levels in cancer patients." Sci Rep. 2018;8(1):16332. PubMed
Isogai Y, Wu Z, Love MI, Ahn MHoYoung, Bambah-Mukku D, Hua V, Farrell K, Dulac C. "Multisensory logic of infant-directed aggression by males. " Cell. 2018;175(7):1827-1841.e17. PubMed
Jeng J, Lu W, Peng H. "High-dimensional inference for personalized treatment decision." Electron J Stat. 2018;12(1):2074-2089. PubMed
Jiang Y, Wang R, Urrutia E, Anastopoulos IN, Nathanson KL, Zhang NR. "CODEX2: Full-spectrum copy number variation detection by high-throughput DNA sequencing." Genome Biol. 2018;19(1):202. PubMed
Jung SH. "Phase II cancer clinical trials for biomarker-guided treatments." J Biopharm Stat. 2018;28(2):256-263. PubMed
Jung SH, Lee HYun, Chow SC. "Statistical methods for conditional survival analysis. " J Biopharm Stat. 2018;28(5):927-938. PubMed
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